Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015814105.1_cds_XP_016497808.1_11903
CDS Infomation

[gene=LOC107816596] [db_xref=GeneID:107816596] [protein=uncharacterized PKHD-type hydroxylase At1g22950-like] [protein_id=XP_016497808.1] [location=complement(join(28026..28228,29909..30052,30350..30465,31220..31338,31572..31696,31800..31886,32335..32485,32573..32749,33623..33670,34597..34881))] [gbkey=CDS]
Sequence

ATGGATCAGAGAAGGGAGGCACAAGCTAACGAGATTAATGGGAGTCAGAGCAATGAAAAC
GACGGCGTTTCATCGAAGGGGCCAGCGCTGCGGCTGTACCCATGTGTAGAGCAGAAGGCG
GAGAACTATGAGGATTTAGAAGAAGAATTGGAGTTCAGCCCACACCTATATAGTGCTCTT
GAGCGGCATCTTCCGAGCAGCGTACTCAGTTCATCTCGAGACAACAAGGTCCAATACATG
ACTGATATTCTCCTCCGTTACTCTCCCCGCGCCGACCGCAGTCGCTTGCAGAAACATGGA
GAATACAGGCAGAAAATCATATCAAACTATCAGCCTTTACACAGGGTGTTATATACCATG
CACGCCGCAGATTTCTTTGTACCGTCGTTTATTAAGGCGATCAGTGAGAATAAGGAGGAA
AGCTTCAGAAAAATAATGTCTGAACCTTCTCCAGGTGTTTTTACATTTGAAATGCTTCAA
CCGCGTTTTTGTGAGATGATGTTGGCTGAGGTACAAAACTTTGAGAAGTGGGTTCGTGAA
ACAAAATTCAGAATCATGCGTCCCAATACTATGAACAAATTTGGAGTTGTTCTTGATGAC
TTTGGCCTTCAAAACATGCTTAAGAAGTTTATGGAAGATTTTATACGCCCTATTTCAACA
GTTTTTTTTACTGAAGTTGGTGGATCCACACTCGATGGTCATCATGGTTTTGTCGTTGAG
TATGGAACAGACAGAGACATTGACTTGGGTTTCCATGTTGATGATGCGGAGGTCACTTTG
AATGTGTGCTTAGGAAAGCAATTCACAGGTGGAGAGTTGTTCTTCCGGGGCGTACGGTGC
GAGAAGCATGTGAACTCTGATACACAGCCAGATGAGATCTTTGATTATGTGCATGTTGCG
GGGCGTGCGATTCTACATTGTGGTCGCCATAGGCATGGTGCTAGAGCGACAACATATGGG
CAGAGGATCAACTTGTTGATATGGTGCAGAAGCTCTGTTTTCAGAGAGACGAGGAAGTAC
CAAACAGATTTTCCAAGCTGGTGTGCAGAGTGCAAGCGTGAGAAGGAAGAAAGGATACGG
CAAAAAGCTTCTATTCTCAAATCGGTAGGAGTTGCGCCTGAGAACTGTATAGCTATTTTT
CTTATCCATTTTCAAGAGTTGCTGAGAAGAGTTGGAGAATGTGAAACTTTACGGCGTAAA
TCCGAATTTGATATGAGTTTTAATATGGGTATCGCAAGAAAATCGCGAAAAGGCATCCTC
AACAAGCCCGCCCGGAACACGGCTACAGAAAATGCAAAGACTTGCCCTATACAACATGCA
AAAGAGCAGTGCAACCAACTCACTCCTCCAACGACAGGTATTACTCACAATGTCATTGAT
AGTGCAGGTGACAACGCCCTCGCAGCCATTCTGAAAAGGATGGAGGAAATGGAGAACAAG
AACAAGGCACTCTGA

Peptide Sequence

PEP ID

XP_016497808.1
PEP Infomation

PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Nicotiana tabacum]
Sequence

MDQRREAQANEINGSQSNENDGVSSKGPALRLYPCVEQKAENYEDLEEELEFSPHLYSAL
ERHLPSSVLSSSRDNKVQYMTDILLRYSPRADRSRLQKHGEYRQKIISNYQPLHRVLYTM
HAADFFVPSFIKAISENKEESFRKIMSEPSPGVFTFEMLQPRFCEMMLAEVQNFEKWVRE
TKFRIMRPNTMNKFGVVLDDFGLQNMLKKFMEDFIRPISTVFFTEVGGSTLDGHHGFVVE
YGTDRDIDLGFHVDDAEVTLNVCLGKQFTGGELFFRGVRCEKHVNSDTQPDEIFDYVHVA
GRAILHCGRHRHGARATTYGQRINLLIWCRSSVFRETRKYQTDFPSWCAECKREKEERIR
QKASILKSVGVAPENCIAIFLIHFQELLRRVGECETLRRKSEFDMSFNMGIARKSRKGIL
NKPARNTATENAKTCPIQHAKEQCNQLTPPTTGITHNVIDSAGDNALAAILKRMEEMENK
NKAL

Transcript Sequence

Gene sequence data has not been registered.